This work package is devoted to case studies. IHAR reaserchers ought to take studies of potato, maize, wheat and triticale.
RA 1. - Optimising and reducing pesticide use based on existing approaches
Subactivity RA 1.1. - Identification, configuration and evaluation of case studies
Scientific responsible: Prof. Edward Arseniuk, Ph.D.
Subactivity RA 1.2. - Implementation of promising approaches (case-studies)
WHEAT
Case studies of powdery mildew (Blumeria graminis) and leaf rust (Puccinia recondita) pathogens on wheat in Poland.
Scientific responsible: Jerzy H. Czembor, D.Sc.
Objectives:
- study of geographical distribution patterns of B. graminis and P. recondita on wheat in Poland
- virulence study of isolates (pathogenicity) of B. graminis and P. recondita collected on wheat
- identification and characterisation of wheat germplasm with effective resistance against population of B. graminis and P. recondita on wheat
- host – pathogen interactions studies of B. graminis and P. recondita on wheat
Fusarium head blight of wheat – improving of resistance to avoid mycotoxin contamination.
Scientific responsible: Tomasz Góral, Ph.D.
Objectives:
- introduction of FHB resistance genes to wheat cultivars and improve average resistance of commercial wheat cultivars. These genes will be introduced from known exotic sources of resistance combining resistance to head infection and DON accumulation
- creating of complex wheat genotypes from known resistant genotypes possessing different resistance genes (QTLs)
- resistance screening to FHB and DON accumulation of wheat germplasm during field experiments conducted under artificial inoculation to identify new sources of resistance
- screening of European wheat gene pool to find genes of resistance to FHB and DON accumulation to avoid, mentioned above, introducing poor agronomic characters. Genotypes with moderately improved resistance will be combined to exploit additive way of action of resistance genes or heterosis for FHB resistance, which was described as common phenomenon
- because of very complex character of resistance to FHB the utilization of selection with mycotoxins and marker assisted selection is needed to develop methods of efficient selection
MAIZE
Study of reduction of Fusarium ear rot and mycotoxin contamination in maize.
Scientific responsible: Elżbieta Kochańska-Czembor, Ph.D.
Objectives:
- to study of maize-G. zeae-environment interactions in Polish conditions
- to improve the understanding of the associated mycotoxin contamination and susceptibility/resistance of maize to ear rot disease
- to identify effective sources of resistance of maize to ear rot and preservation of biodiversity based on mycotoxin contamination
- to develop testing program and provide long-term performance data necessary for recommendations and producer management decision
- to contribute to the exploitation of genetic resources of maize for reduction of ear rot and mycotoxin contamination
POTATO
Scientific responsible: Renata Lebecka, Ph.D.
Within ENDURE - RA1. Optimising and reducing pesticide use "Potato case" study was used to demonstrate the relevance, effectiveness, feasibility and acceptability of new control strategies in different agro-ecological contexts across Europe:
Survey of "the state of the art of late & early blight control strategies" in Poland was conducted.
Potato is an important crop in Polish agriculture. About 11.2 mln tones of potato were produced on 570 thousands of ha in 2007.
Late blight (LB) is an important disease in potatoes. In Poland yield losses resulting from P. infestans infection were estimated in a range of 20-25% (Pietkiewicz 1989).
In the years 1999-2003 the yield losses were higher and ranged from 22 to 57% (Kapsa 2004).
Early blight (EB) is an increasing problem in Poland. Observations carried out in the years 1998-2006 revealed that EB occurrence on potato crop is common in most production areas, on 86% of observed fields. The first symptoms of EB are observed at the end of May or the beginning of June. High regional losses caused by EB can be observed in susceptible cultivars. The losses, depending on the year, range from 6 to 45%.
Research studies relevant to Integrated Control Strategies of potato conducted by researchers of Plant Breeding and Acclimatization Institute (IHAR) from two centers at Bonin and Młochów are:
- Resistance of potato to LB:
- Resistance evaluation: field trials are carried out to estimate resistance of new registered varieties to P. infestans and the reaction for fungicide treatment (annually about 40 varieties). Recommendations based on these results will be published.
- Reduction of fungicide application in resistant potato cultivars: In years 2001-2003 experimental trials were conducted on the reduction of fungicide application in resistant cultivars, and the results were presented on conference organized by IHAR-PIB in Zakopane (2007).
- Stability of resistance to LB of Polish potato cultivars: due to changes in virulence of P. infestans isolates stability of resistance to LB of potato plants is tested in non-protected field conditions and tuber resistance in laboratory conditions. Results of these studies are published on EUCABLIGHT website http://www.eucablight.org/.
- Studies on new tetraploid sources of resistance to P. infestans: searching for resistance to LB in order to obtain resistant parental clones for breeders.
- Introduction of resistance genes to P. infestans from Solanum michoacanum into cultivated potato S. tuberosum and development of PCR markers for their selection: Wild species of Solanum are used as a source of resistance in breeding resistant potato cultivars. S. michoacanum is a new source of resistance, which can be used as a donor of resistance by somatic hybridization.
- Monitoring of P. infestans population in Poland: P. infestans isolates are collected each year in collaboration with Voivodeship Inspectorates of Plant Inspectorate of Plant Health and Seed Inspection from different locations in Poland. These isolates are characterized for virulence, mating type, resistance to metalaxyl, type of mitochondrial DNA and variation using molecular markers. The results are published in the database on EUCABLIGHT website http://www.eucablight.org/ presented at conferences, workshops, published as scientific papers and in popular agricultural journals.
- Maintenance of the collection of P. infestans isolates: More than 400 P. infestans isolates are maintained as pure cultures in the Collection of Potato Pathogens at IHAR-PIB Młochów. Isolates are used for screening for resistance to LB of potato clones. They are free of charge for scientific purposes and they are used by other researchers in Poland and abroad.
- Decision Support Systems: wide education for farmers are implemented by research workers from IHAR-PIB Bonin and Młochów (lectures, trainings, instructions, articles in popular agriculture journals).
- NegFry is implemented in field experiments in a few agricultural institutes (IHAR-PIB - Bonin, IUNG - Pulawy, IOR-PIB - Poznań) and fields of Protection Services since 2001. The model supplies information about the optimum time to spray and the type of fungicide to use. A starting date of the protection is accessible for all farmers in the Internet http://www.dss.iung.pulawy.pl/
- Fungicides: Each year efficacy of new fungicides and fungicide programs are assessed in field trials in 4 different locations. The results of these trials are used in discussions with farmers and comparisons are made between the trial results and their spraying schedules regarding efficacy, costs and environmental side-effects.
- Time of first symptoms of LB in the field: field studies were conducted at IHAR-PIB Bonin in years 1996-2007 in which time of the occurrence and incidence level of LB was scored. The earliest symptoms were observed 42 days after planting - in 2001, and latest 111 days after planting - in 2006.
International collaboration - IHAR-PIB's scientists actively participate in:
- The EUCABLIGHT - project has collated, harmonised and disseminated methods for the phenotypic and genotypic characterisation of the pathogen and for host resistance. In addition, existing and newly generated data has been collected using a data entry tool specifically designed for the purpose. This data is held in databases, facilitating analysis of the pooled data on a European scale.
- The EU.NET.ICP network - a harmonised protocol was developed to validate DSS for control of LB in different European Countries. Also the fungicide characteristics (to be included in the DSS) are rated according to harmonised protocols for testing the effectiveness and mode of action.
The EuroBlight network, resulted from combined EUCABLIGHT and EU.NET.ICP - consists of all the important scientists and specialists in DSS, fungicides, pathogen, host resistance, who exchange their knowledge and utilize them in their research and extension activities to plant inspectors and farmers.
WHEAT
RA 1.2 Wheat
Scientific responsible : Elżbieta Kochanska-Czembor, Ph.D., tomasz Góral, Ph.D.
Responsible IHAR researchers: Tomasz Góral, Ph.D.
The information collected on disease menagement in wheat in Poland were used to write deliverable 1.2 "Best control practices of disease in winter wheat". Results from Wheat case study were presented during ENDURE's International Conference ( 12-15 October 2008, La Grande Motte, France). Reports from wheat case study (2008) are available on the Euro-wheat web page. Additionally two leaflets on reducing fungicide impact and control of Fusarium head blight were prepered and are available on the Euro-wheat web page.
http://www/eurowheat.org/EuroWheat.asp
Responsilbe IHAR researchers: Elżbieta Kochańska-Czembor, Ph.D.
a) Collection data current system of wheat production system in Poland - pests, disease and weed control- survey questionnaire wheat
b) Final report on the use of pesticides and plant protection methods in two case - study crops in different regions (including Poland).
RA 2. Desining innovative crop protection strategies
RA 2.1. Prevention of pest incidence at the cropping system level
Scientific responsible: Jerzy H. Czembor, D.Sc.
Modeling has already been extensively used to design and assess new cropping systems or impacts of policies on the sustainability of farming systems. Testing integrated crop management strategies through conventional experiments is heavy and often inappropriate to cope with the whole range of interactions. To overcome those limitations, modeling has become a major field of investigation to assess the impacts of new crop protection strategies.
This framework will favour the design of innovative and efficient crop protection strategies even if they may not yet be economically viable, technically feasible, or socially acceptable in order to find out what would be the conditions for they applicability (regulations, economic incentives etc). Only such a pro-active approach will make it feasible o explore truly new solutions.
- Design of innovative candidate crop protection strategies, based on emerging knowledge and technologies,
- Ex ante description of their characteristics and behavior in terms o sustainability and its various components (technical, environmental, ecological, economic and social); both quantitative models and expertise will be used,
- Ex ante assessment of their overall performances under various contexts and scenarios through a multi-criteria hierarchical analysis,
- Testing of the most promising ones through long term experimentation and/or transfer to practice.
Experiment on spring wheat has been conducted in 2008 on 4 fields, each in different crop system.
- Intensive management (20ha field in Radzików, variety Raweta)
- Integrated management with no chemicals (0,65ha field in Radzików, variety Raweta)
- Integrated management with possible use of chemicals (6,3ha field in Kawęczyn belonging to Research Centre for Cultivar Testing, variety Grywa)
- Organic management (3,24ha field in Gogole Wielkie Certificated Organic Production Farm, variety Nawra).
The observations were conducted in 2008 over all growing season from April to August. Under observations samplings were taken away from five homogenous sampling zones located on the field. In any attempt there were five plants of brand cultivar and at a pinch weeds from 0,5m2. The assessments of plants development stages, dynamics of injuries (pest and disease) during crop growth. Five representative plants were carefully washed and spited. The different organs of samples plants (roots, stem, living leaves, dead leaves and ears) were then put into paper bags for oven drying (70°C, 3-4 days until dry) and weighted separately. Data were collected by using EXEL application. Weather data (min. and max. temperature and global radiation) were recorded daily from emergence to crop maturity.
RA 2.2. Exploitation of innovative technologies for implementing crop protection strategies
Scientific responsible: Elżbieta Kochanska-Czembor, Ph.D.
a) Co-author of review paper: "Molecular and serological diagnostic tools help prevention of pests and diseases in the agro sector".
b) Participation in the RA1.2 kick-off meeting (1-2.04.2008), ART, tanikon, Switzerland - presentation and participation in the discussion on technigues for detection of pests and mycotoxin and spray appliciation of chemicals.
c) Participation in the RA2.2 meeting (4.06.2008), Horsens, Denmark - co-author of lecture presentation and participation in the discussion on the future crop protection systems using diagnostic tools and precision spraying technigues.
d) Collecting information on actions for prevention of occurrence of diseases, pests and weeds before growing period and of general data/environmental data that can period on macro and micro scale.
RA 2.6b. Desining innovative crop protection strategies in arable rotation Maize Based Systems (MBCS)
Scientific responsible: Elżbieta Kochanska-Czembor, Ph.D.
The collaboration with IHAR-PIB, originally was not foressen, however data were provided and IHAR-PIB was included into this subactivity.
a) collection data of arable crop rotation according to provided dataset questionnaire
RA 3. - Multi-sector evaluation of crop protection methods and cropping systems
RA 3.1 - Specific and general surveillance of pest incidence
Specific and general surveillance of powdery mildew (Blumeria graminis) and leaf rust (Puccinia recondita) pathogens on wheat and triticale in Poland.
Scientific responsible: Jerzy H. Czembor, D.Sc.
Objectives:
- study of incidence and geographical distribution patterns of B. graminis and P. recondita on triticale and wheat in Poland based on two sampling methods: ‘leaf samples’ from 11 locations and ‘disease nurseries’ in 6 locations
- virulence study of isolates (pathogenicity) of B. graminis and P. recondita collected on wheat and triticale using differential sets of cultivars and breeding lines
Specific and general surveillance of pest incidence - Monitoring of Fusarium ear rot population and mycotoxin contamination in maize.
Scientific responsible: Elżbieta Kochańska-Czembor, Ph. D.
Objectives:
- to monitor and study of maize-Fusarium-environment interactions in Polish conditions
- to study aggressiveness and DON production among isolates originating from: (1) one field, (2) different fields in the same location, (3) fields from 4 different location in Poland under greenhouse and field conditions
- to study the diversity of isolates collected from the moderately resistant maize population and from susceptible one and mycotoxin contamination
- to study effect of different agronomic practices and management cropping system on occurrence of G. zeae (effect of reduced tillage on crop yield and contamination of mycotoxin)
Surveillance of Ralstonia solanacearum incidence on potato.
Scientific responsible: Dr Anna Przetakiewicz
Objectives:
- testing of viability and survival of bacteria in artificially infected plants and tubers of domestic potato varieties in connection with analyses of plant – pathogen interactions
- prepare, collect and maintain in viable state isolates of Ralstonia solanacearum originate from Polish potato varieties
- conducting research on infection ways of healthy plant material being in contact with contaminated equipment used in potato production chain (storages) and processing equipment, laboratories and greenhouses
Epidemiological studies and evaluation of the availability of resistance for bacterial ring rot caused by Clavibacter michiganensis subsp. sepedonicus in European cultivated potato genotypes.
Scientific responsible: Mr. Sebastian Brzozowski
Objectives:
- to determine of C. m. subsp. sepedonicus survival period in soil and on surfaces of plant materials, equipment and machinery used in potato production and processing under different temperatures and air humidities
- establish the viability of Cms cells and their virulence using different detection methods, including: plating on semi-selective agar media, immunofluorescent colony staining (IFC), pathogenicity test on eggplant, fluorescent in situ hybridization (FISH)
- epidemiological studies of Clavibacter michiganensis subsp. sepedonicus would include survival in the soil, water and on different surfaces being in contact with bacteria in the potato production and processing systems
- molecular and biochemical characterization of Clavibacter michiganensis subsp. sepedonicus population in Poland
- establish collection of Clavibacter michiganensis subsp. sepedonicus strains
- evaluation of susceptibility of selected European potato cultivars to bacterial ring rot
RA 3.3 - Environmental risk and benefit assessment
Scientific responsible: Elżbieta Kochańska-Czembor, Ph. D.
RA 3.5 - Societal assessment of current and novel low input crop protection strategies
Scientific responsible: Anna Wierzbicka, MSc.
The purpose of the task are issues related to production and consumption of food without pesticide residues produced environment-friendly methods. Social assessment relate to the analysis in which extent of the supermarkets requirements affect both consumers and producers.
Objectives:
1. Organization of the food network in Poland (in particular supermarkets) and their impact on producers practices,
- § the implementation of changes related to the reduction of pesticides,
- § organization of production in order to reduce costs,
- § introduction of quality systems at the stage of production, distribution and sales,
- § influence on the promotion of healthy food.
2. The changes in the consumption context,
- § improve the quality of fruit from the consumers' point of view,
- § impact of consumer preferences on the size of sales,
- § development of consumption of processed fruit,
- § ways of informing consumers.
3. A comparison of polish research results to the situation in the western EU countries.
The scope of work under this theme relates mainly to the apples, the most widespread fruit in our country.
Tools and methods: quantitative and qualitative research through questionnaires and interviews with all market participants, monitoring of fruit on the Warsaw market, drawing up working paper and reports.
- § 30.01.2009 in Paris a presentation on the impact of supermarkets on the Polish potatoes production.
- § 3-4.06.2009 in Paris a work paper was presented on the results of work on supermarket demand's impact on the polish fruit production. Participation in workshop regarding to 1 and 4 task.
Cooperation with INRA in the realisation of task 1 in Poland. RA 3.51 - Governance and the structuration of research and extension systems.
- An organization of work plan during a visit to Poland of Marc Barbier, Ph. D. (15 - 21.04.2009).
Providing a description of the analysis NAS/NAP (National Action System/Plan) and methodological notes in this theme.
RA 4. - Improving the basic understanding of the biology of the crop-pest systems
RA 4.2 - Exploitation of plant genetic resistance
Exploitation of wheat and triticale resistance to Mycosphaerella graminicola and Stagonospora nodorum.
(With interrelations to RA 1.2, RA 2.1 and RA 3.1)
Scientific responsible: Professor Edward Arseniuk, D.Sc., in cooperation with Ms. Ewelina Reszka
Objectives:
- Studying of phenotypic traits of partial resistance to S. nodorum and S. tritici in winter wheat and triticale elite cultivars and DH lines under controlled environment.
- Resistance screening of winter wheat and triticale germplasms in field tests.
Wheat – molecular breeding for resistance to yellow rust (Puccinia striiformis f.sp. tritici) and leaf rust (Puccinia recondita f.sp. tritici).
Scientific responsible: Paweł Czembor, Ph.D.
Objectives:
- pyramiding of non-specific and major resistance genes to yellow rust and leaf rust in wheat using molecular markers.
- Wheat x Puccinia pathosystem:
Pavon 76 'S' line with partial additive adult plant resistance locus Yr29 to yellow rust will be tested in preliminary experiments held in Denmark (spring 2008). Next, adult plant testing at least in one location (France and/or Denmark) will be established in spring 2009 year. In course of the experiments at least level of disease control will be assessed when exposed to different pathogen isolates.
- Wheat x Mycosphaerella pathosystem:
In Liwilla wheat cultivar several QTLs associated with resistance to Mycospahaerella graminicola
have been detected. QTLs located on chromosomes 7A and 1B are effective both at seedling and adult plant stage. Each of these QTLs explained phenotypic variation in range 20-30%. We would like to assess selection pressure on defined pathogen population exert by different combinations of quantitative resistance loci.
RA 4.4. Invading and emerging pests
Scientific responsible: Jerzy H. Czembor, D.Sc.
Participation in RA4.4 workshop during ENDURE Kick-off Meeting, 21-23.02.2007, INRA Sophia-Antipolis, France. Participation in RA4.4 workshop during ENDURE Annual Meeting 14-15.11.2007, INRA Versailles, France. Gathering data and conducting research on the development and characterisation of novel sources of germplasm for pest resistance, coupled with studies on genetics of powdery mildew (Blumeria graminis) and leaf rust (Puccinia recondita), as new pathogens on triticale in Poland. It included 4 major subjects:
1. Study of incidence and geographical distribution patterns of B. graminis and P. recondita on
triticale and wheat in Poland - especially concerning new, emerging virulences in population
of these pathogens.
2. Virulence study of isolates (pathogenicity) of B. graminis and P. recondita collected on wheat and
triticale.
3. Identification and characterisation of wheat and triticale germplasm with effective resistance against
population of B. graminis and P. recondita on wheat and triticale in Poland and Europe.
4. Host - pathogen interactions studies of B. graminis and P. recondita on wheat and triticale.
RA 4.5 - Weed biology and management
Scientific responsible: Denice Fu Dostatny, Ph.D.
The main goal of the ENDURE RA4.5 Working Group in the first 18 moths was develop Weed Traits Database (WTDB). The WTDB is an open database residing on Internet. It provides information about weed traits and parameters for the species most important to European agriculture.
The participation of IHAR in the first 18 months:
- provided input to the Weed Traits Database: participation in 3 workshops, in which were discussed: design of a Weed Traits Database (WTDB), construction and implementation of the WTDB. Provided input to developing WTDB through the phases of design, implementation and filling in of data for 2 species of weeds: Galinsoga parviflora and Avena fatua. Data manly came from literature, but also from unpublished material and research conducted in IHAR.
- expert knowledge for the weed-modelling tool